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Unveiling Ancient Life and the Great Oxidation Event

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Grand Prismatic Spring in YellowstoneGrand Prismatic Spring in Yellowstone

Scientists conducted their research in the hot springs of Yellowstone National Park, which is also home to the Grand Prismatic Spring pictured here. (Pandora Pictures/Shutterstock)

In a nutshell

  • Scientists studying microbes in Yellowstone’s hot springs have discovered how ancient life might have survived when Earth had very little oxygen. By comparing two springs with different oxygen levels, they found that microbes use specialized proteins to extract energy from their environment, adapting their strategies based on available resources.
  • The study focused on two hot springs: Conch Spring (low oxygen, high sulfide) hosted just 3-4 types of microbes, while Octopus Spring (higher oxygen, low sulfide) supported about 15 different types. This difference in diversity demonstrates how increased oxygen levels can support more varied life forms.
  • Three key microbe species found in both springs showed remarkable adaptability, switching their survival strategies based on oxygen availability. This suggests early life forms may have had similar flexibility during Earth’s Great Oxidation Event 2.4 billion years ago, when the planet’s atmosphere changed dramatically.

BOZEMAN, Mont. — Billions of years ago, Earth was unrecognizable. It was an oxygen-poor planet hostile to most modern life forms. Today, in the scalding waters of Yellowstone National Park’s geothermal springs, scientists have discovered microbes that might reveal how life survived those harsh early conditions. A new study from Montana State University shows how these ancient organisms adapted to an environment that mirrors our planet’s earliest days.

The Great Oxidation Event marked a pivotal moment in Earth’s history. Roughly 2.4 billion years ago, our planet’s atmosphere transformed from virtually no oxygen to containing significant amounts of this vital gas. Today’s atmosphere is about 20% oxygen, but historically, oxygen levels were so low they would have been almost undetectable by modern instruments. This dramatic shift reshaped life on Earth, but questions remained about how organisms survived during this transition.

The study, published in Nature Communications, revealed answers in an unlikely place—the superheated waters of Yellowstone’s hot springs. In these extreme environments, where temperatures reach 190 degrees Fahrenheit (88°C), modern microbes demonstrate survival strategies that may mirror those used by Earth’s earliest life forms.

The research team focused on two specific hot springs in Yellowstone’s Lower Geyser Basin: Conch and Octopus Springs. While these springs share many characteristics, they differ in one crucial aspect: their chemistry. Conch Spring contains high levels of dissolved sulfide and almost no oxygen, creating conditions similar to Earth’s early atmosphere. Octopus Spring has higher oxygen levels and very little sulfide, representing a more modern environment.

“When oxygen started to increase in the environment, these thermophiles were likely important in the origin of microbial life,” says study author William P. Inskeep, in a statement. “There was an evolution of organisms that utilized oxygen. Octopus has more oxygen, and sure enough, there’s more aerobic organisms there. These environments have different casts of characters.”

Within these springs, the researchers discovered remarkable structures called “streamers,” visible formations that resemble small kelp plants. These streamers attach to rocks and other surfaces within the springs, developing filaments that wave in the rapid currents. While these structures look similar in both springs, they host vastly different microbial communities.

In Conch Spring’s oxygen-poor environment, the researchers found a specialized community of just 3-4 different types of microbes. These organisms have evolved remarkable adaptations that allow them to survive with minimal oxygen, including specialized proteins called high-affinity oxygen reductases. These proteins can effectively capture and use oxygen even when it’s present in extremely low concentrations.

The situation in Octopus Spring reveals a different story. Its more oxygen-rich waters support approximately 15 different types of microorganisms, demonstrating how increased oxygen levels can promote biological diversity. These microbes have developed various strategies for energy production, taking advantage of the higher oxygen availability in their environment.

Lower Geyser Basin in Yellowstone National ParkLower Geyser Basin in Yellowstone National Park
Yellowstone’s Lower Geyser Basin, where the springs in this study are located. (e X p o s e/Shutterstock)

Despite their differences, both springs share three key microbial species: Thermocrinis, Pyrobaculum, and Caldipriscus. These ancient lineages show remarkable adaptability, altering their survival strategies based on available resources. By studying the genes these microbes express in different environments, researchers gained insights into how early life might have adapted as Earth’s atmosphere changed.

The research represents over two decades of scientific investigation in Yellowstone National Park. Montana State University’s location in the Greater Yellowstone Ecosystem provides unique opportunities for this research.

“It would be very difficult to reproduce this kind of an experiment in the laboratory; imagine trying to create hot-water streams with just the right amounts of oxygen and sulfide. And that’s what’s so nice about studying these environments. We can make these observations in the exact geochemical conditions that these organisms need to thrive,” says Inskeep, who has conducted research in Yellowstone since 1999.

These microorganisms’ ability to adapt to different oxygen levels demonstrates the remarkable flexibility of life. The research shows how organisms can develop various strategies to survive in challenging conditions, from using specialized proteins to forming complex communities.

The presence of similar microbial species in both springs, despite their different oxygen levels, suggests that early life forms might have possessed remarkable adaptability. This flexibility would have been crucial during the Great Oxidation Event, as organisms needed to adapt to increasing oxygen levels in Earth’s atmosphere.

“It may seem counterintuitive to understand complex life by studying something that’s simple, but that’s really how it has to start,” says study author Mensure Dlakić, an associate professor in the Department of Microbiology and Cell Biology. “You have to think back to understand where we are today.”

This research contributes to our understanding of how life evolves and adapts to environmental changes. While modern hot springs cannot perfectly replicate Earth’s ancient conditions, they provide valuable insights into the strategies that early life forms might have used to survive. These findings help piece together the complex puzzle of life’s evolution on Earth and may inform our search for life on other planets.

Paper Summary

Methodology

The research team collected samples from both springs over nearly a decade, conducting detailed analyses of the microbial communities using DNA and RNA sequencing to understand both their genetic potential and actual activity. They used electron microscopy to examine the physical structure of these communities and performed extensive geochemical analyses to characterize the springs’ environmental conditions. This long-term study, supported by the National Science Foundation’s Opportunities for Promoting Understanding through Synthesis program, allowed researchers to observe patterns and changes over time.

Results

The study revealed that while both springs contained similar core species, their metabolic activities differed dramatically based on available resources. In low-oxygen conditions, microbes expressed genes for high-affinity oxygen reductases, while in higher-oxygen environments, they utilized different enzymatic pathways. The research also demonstrated how these organisms could switch between different metabolic strategies depending on environmental conditions.

Limitations

The study focused on only two hot springs in Yellowstone, which might not represent all possible variations of such environments. Additionally, while the research provides insights into ancient life, modern organisms have evolved over billions of years and may not perfectly represent their ancient counterparts.

Discussion and Takeaways

This research provides evidence that early life could have thrived in low-oxygen environments using similar strategies to those observed in these hot springs. The study also demonstrates the remarkable adaptability of microbial life and its ability to optimize survival strategies based on available resources.

Funding and Disclosures

The research was supported by the National Science Foundation’s Opportunities for Promoting Understanding through Synthesis program and Montana State University. The study was conducted under National Park Service Research Permits in Yellowstone National Park.

Publication Information

The study, titled “Respiratory processes of early-evolved hyperthermophiles in sulfidic and low-oxygen geothermal microbial communities,” was published in Nature Communications on January 2, 2025. The research team included scientists from Montana State University’s Department of Land Resources and Environmental Sciences, Thermal Biology Institute, Department of Chemistry and Biochemistry, and Department of Microbiology and Cell Biology.

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